PokerTracker

I set my preferred seatings on Full Tilt but PT4 will show the hole card all in equities in the wrong places in heads up tables. How can I fix this?

Full Tilt's new preferred seating options are not yet supported - we didn't want to hold up the release of the beta to add that initially.
For now, you can use the Auto Center option in Full Tilt and the Hud will line up as long as you enable the Auto Center option in PT4 as well. (You'll probably need to arrange your stats one more time since they're probably out of position now.)