Those hands won't have imported into PokerTracker 4 at all because of the duplicate showdown cards in the hand history. You need to edit the hand history and then run a manual import (Play Poker -> Get Hands From Disk) on the edited file to import it into your database (you don't need to worry about the other hands in the hand history file because PokerTracker 4 will recognise those as duplicates and skip the import of hands that are already in your database).
monkeywicked wrote:The original hand histories seem to be deleted after the processed hands are created.
The original hands are not deleted - they just get moved from your poker sites hand history folder to the processed folder.