PokerTracker

I exported my hand histories from PT2 to text files and imported them into PT3. After the import, the game types are all screwed up with each of the limits having most of the hands listed as 6-max, but with a significant number of them listed as 2-max i.e. 70k hands are listed as $1 NL (6 max) and 20k as $1 NL (2 max) even though all 90k of them were played at $1 NL (6 max) tables. To make things even more confusing, when I looked at a few of the 2-max hands in the sessions tab and pulled up the hand details there are more than two players listed as sitting at the table and more than two players with money in the pot. Is anyone else having this problem?

Did you do a Purge before doing this import? If so, please try restarting PT3 and see if that sorts it.
Otherwise, are you using "adjust qualifying tables limits" option (set on auto-import tab, applies to manual import too)?